PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00181.1.g00540.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 212aa    MW: 23631.4 Da    PI: 6.6782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00181.1.g00540.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1970119356
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  Zpz_sc00181.1.g00540.1.sm.mk  70 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 119
                                   9*******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3669132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3169127IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2269127IPR016177DNA-binding domain
PROSITE profilePS5103224.59269126IPR001471AP2/ERF domain
PRINTSPR003672.5E-117081IPR001471AP2/ERF domain
CDDcd000181.55E-1570127No hitNo description
PfamPF008471.8E-1270118IPR001471AP2/ERF domain
PRINTSPR003672.5E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MCGGAIISEY IPHRPTGGGS SKRSLCATDF WPDAAADFDV DPVNPERATG AAYPVADQEP  60
ARKRERKTMY RGIRRRPWGK WAAEIRDPAK GARVWLGTFA TAEAAARAYD RAARRIRGAK  120
AKVNFPNEDP PPDNEYDDHV MMPVDYDAVL GLFHHHPPYV HDAVPVNAAP EVAYVHHHQQ  180
QQQLPPPQQQ QHDVDAGIEL WTFDNIGTTV PI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2270126663ATERF1
3gcc_A1e-2270126663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068ARKRERKTM
26276KRERKTMYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768702e-92EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283482e-92KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.14e-64PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427369e-38RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0LPQ73e-66A0A0E0LPQ7_ORYPU; Uncharacterized protein
STRINGORGLA07G0205000.13e-64(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-21ERF family protein